Variant report

Variant	rs28572488
Chromosome Location	chr21:28006715-28006716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13433470	0.83[AMR][1000 genomes]
rs1543775	0.83[AMR][1000 genomes]
rs1893573	0.83[AMR][1000 genomes]
rs2135305	0.83[AMR][1000 genomes]
rs2830280	0.83[AMR][1000 genomes]
rs2830282	0.83[AMR][1000 genomes]
rs2830295	0.83[AMR][1000 genomes]
rs2830296	0.83[AMR][1000 genomes]
rs2830298	0.83[AMR][1000 genomes]
rs2830299	0.83[AMR][1000 genomes]
rs2830300	0.83[AMR][1000 genomes]
rs2830301	0.83[AMR][1000 genomes]
rs28401356	0.83[AMR][1000 genomes]
rs28525622	0.83[AMR][1000 genomes]
rs28624518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28678819	0.83[AMR][1000 genomes]
rs57821067	0.83[AMR][1000 genomes]
rs7277524	0.83[AMR][1000 genomes]
rs7283190	0.83[AMR][1000 genomes]
rs73351185	0.83[AMR][1000 genomes]
rs73351190	0.83[AMR][1000 genomes]
rs73353008	0.83[AMR][1000 genomes]
rs8127446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8128689	0.83[AMR][1000 genomes]
rs8129320	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8129932	0.83[AMR][1000 genomes]
rs8129933	0.83[AMR][1000 genomes]
rs8130654	0.83[AMR][1000 genomes]
rs9974221	0.83[AMR][1000 genomes]
rs9975467	0.83[AMR][1000 genomes]
rs9978127	0.83[AMR][1000 genomes]
rs9979986	0.83[AMR][1000 genomes]
rs9980194	0.83[AMR][1000 genomes]
rs9980419	0.83[AMR][1000 genomes]
rs9989934	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv913661	chr21:27979924-28025461	Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28005400-28008200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links