Variant report

Variant	rs57821067
Chromosome Location	chr21:27960773-27960774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13433470	1.00[AMR][1000 genomes]
rs1543775	1.00[AMR][1000 genomes]
rs1893573	1.00[AMR][1000 genomes]
rs1893576	0.96[AFR][1000 genomes]
rs2135305	1.00[AMR][1000 genomes]
rs2830275	0.83[AMR][1000 genomes]
rs2830280	1.00[AMR][1000 genomes]
rs2830282	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2830293	0.94[AFR][1000 genomes]
rs2830294	0.92[AFR][1000 genomes]
rs2830295	1.00[AMR][1000 genomes]
rs2830296	1.00[AMR][1000 genomes]
rs2830298	1.00[AMR][1000 genomes]
rs2830299	1.00[AMR][1000 genomes]
rs2830300	1.00[AMR][1000 genomes]
rs2830301	1.00[AMR][1000 genomes]
rs28401356	1.00[AMR][1000 genomes]
rs28525622	1.00[AMR][1000 genomes]
rs28572488	0.83[AMR][1000 genomes]
rs28624518	0.83[AMR][1000 genomes]
rs28678819	1.00[AMR][1000 genomes]
rs59317497	0.88[AFR][1000 genomes]
rs7277524	1.00[AMR][1000 genomes]
rs7283190	1.00[AMR][1000 genomes]
rs73351185	1.00[AMR][1000 genomes]
rs73351190	1.00[AMR][1000 genomes]
rs73353008	1.00[AMR][1000 genomes]
rs8127446	0.83[AMR][1000 genomes]
rs8128689	1.00[AMR][1000 genomes]
rs8129932	1.00[AMR][1000 genomes]
rs8129933	1.00[AMR][1000 genomes]
rs8130654	1.00[AMR][1000 genomes]
rs8133538	0.91[AMR][1000 genomes]
rs9974221	1.00[AMR][1000 genomes]
rs9975467	1.00[AMR][1000 genomes]
rs9975732	0.91[AMR][1000 genomes]
rs9978127	1.00[AMR][1000 genomes]
rs9979986	1.00[AMR][1000 genomes]
rs9980194	1.00[AMR][1000 genomes]
rs9980419	1.00[AMR][1000 genomes]
rs9989934	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27958400-27962200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr21:27959800-27961000	Enhancers	Hela-S3	cervix
3	chr21:27959800-27961000	Enhancers	NHEK	skin
4	chr21:27959800-27961200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr21:27960000-27961000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr21:27960000-27961000	Active TSS	Right Atrium	heart
7	chr21:27960200-27960800	Active TSS	Fetal Brain Male	brain
8	chr21:27960200-27960800	Flanking Active TSS	HUVEC	blood vessel
9	chr21:27960400-27960800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr21:27960400-27960800	Active TSS	Fetal Lung	lung
11	chr21:27960400-27960800	Active TSS	Stomach Smooth Muscle	stomach
12	chr21:27960400-27960800	Enhancers	HSMMtube	muscle
13	chr21:27960600-27960800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr21:27960600-27960800	Enhancers	NHLF	lung
15	chr21:27960600-27961000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr21:27960600-27961000	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr21:27960600-27961000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr21:27960600-27961000	Flanking Active TSS	NHDF-Ad	bronchial
19	chr21:27960600-27961200	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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