Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13433431	0.83[YRI][hapmap]
rs1893576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2830282	0.87[AFR][1000 genomes]
rs2830293	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28404770	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57795228	0.93[EUR][1000 genomes]
rs57821067	0.92[AFR][1000 genomes]
rs59317497	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7277524	0.81[YRI][hapmap]
rs73898272	1.00[EUR][1000 genomes]
rs73898279	1.00[EUR][1000 genomes]
rs73898281	1.00[EUR][1000 genomes]
rs73898282	1.00[EUR][1000 genomes]
rs73898283	0.93[EUR][1000 genomes]
rs8128643	1.00[EUR][1000 genomes]
rs8128689	0.81[YRI][hapmap]
rs9977977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9979121	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9979840	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9980300	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9984233	1.00[CEU][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9984431	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27966200-27966800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr21:27966200-27966800	Enhancers	NHEK	skin
3	chr21:27966600-27969400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr21:27966600-27970000	Weak transcription	Pancreas	Pancrea

Quick Search: