Variant report

Variant	rs9977977
Chromosome Location	chr21:27963279-27963280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1893576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2830293	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2830294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28404770	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57795228	0.93[EUR][1000 genomes]
rs59317497	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73898272	1.00[EUR][1000 genomes]
rs73898279	1.00[EUR][1000 genomes]
rs73898281	1.00[EUR][1000 genomes]
rs73898282	1.00[EUR][1000 genomes]
rs73898283	0.93[EUR][1000 genomes]
rs8128643	1.00[EUR][1000 genomes]
rs9979121	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9979840	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9980300	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9984233	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9984431	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27961000-27966200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr21:27961000-27966200	Weak transcription	NHEK	skin
3	chr21:27961200-27963800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr21:27962800-27963600	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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