Variant report

Variant	rs73898272
Chromosome Location	chr21:27959900-27959901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1893576	1.00[EUR][1000 genomes]
rs2830293	0.97[EUR][1000 genomes]
rs2830294	1.00[EUR][1000 genomes]
rs28404770	0.93[EUR][1000 genomes]
rs57795228	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59317497	0.93[EUR][1000 genomes]
rs73898279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898283	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8128643	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9977977	1.00[EUR][1000 genomes]
rs9979121	0.93[EUR][1000 genomes]
rs9979840	0.93[EUR][1000 genomes]
rs9980300	0.84[EUR][1000 genomes]
rs9984233	1.00[EUR][1000 genomes]
rs9984431	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27958400-27962200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr21:27959600-27960000	Enhancers	NHDF-Ad	bronchial
3	chr21:27959600-27960200	Enhancers	HUVEC	blood vessel
4	chr21:27959600-27960200	Enhancers	NHLF	lung
5	chr21:27959800-27960000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr21:27959800-27960000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr21:27959800-27960000	Flanking Active TSS	Fetal Lung	lung
8	chr21:27959800-27961000	Enhancers	Hela-S3	cervix
9	chr21:27959800-27961000	Enhancers	NHEK	skin
10	chr21:27959800-27961200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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