Variant report

Variant	rs285727
Chromosome Location	chr15:93224892-93224893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93186486..93189076-chr15:93224544..93226997,2	MCF-7	breast:
2	chr15:93222087..93224907-chr15:93225321..93227678,2	MCF-7	breast:
3	chr15:93211008..93212607-chr15:93224568..93226247,2	MCF-7	breast:
4	chr15:93224785..93226821-chr15:93245528..93247882,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10520712	0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11074093	0.91[MEX][hapmap]
rs11074094	0.91[CHB][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs12440553	0.80[EUR][1000 genomes]
rs12904403	0.96[ASN][1000 genomes]
rs1532430	0.86[CHB][hapmap]
rs1808817	0.83[ASN][1000 genomes]
rs285726	0.83[ASN][1000 genomes]
rs285742	0.93[GIH][hapmap]
rs4778024	0.92[ASN][1000 genomes]
rs4778025	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1036897	chr15:93211991-93239388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs285727	FAM174B	cis	cerebellum	SCAN
rs285727	LOC400451	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93214800-93232200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93221800-93226200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:93224000-93226800	Enhancers	HSMM	muscle
4	chr15:93224200-93226600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:93224200-93226600	Enhancers	Adipose Nuclei	Adipose
6	chr15:93224200-93226800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:93224200-93226800	Enhancers	Fetal Stomach	stomach
8	chr15:93224400-93225000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:93224400-93225000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:93224400-93225000	Enhancers	Hela-S3	cervix
11	chr15:93224400-93225000	Enhancers	HUVEC	blood vessel
12	chr15:93224400-93225200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:93224400-93225400	Enhancers	Placenta	Placenta
14	chr15:93224400-93226000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr15:93224400-93226600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:93224400-93226600	Enhancers	HSMMtube	muscle
17	chr15:93224400-93226800	Enhancers	Fetal Muscle Leg	muscle
18	chr15:93224400-93227200	Enhancers	Fetal Lung	lung
19	chr15:93224600-93225000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:93224600-93225000	Enhancers	Fetal Brain Male	brain
21	chr15:93224600-93225000	Weak transcription	NHDF-Ad	bronchial
22	chr15:93224800-93225000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr15:93224800-93225000	Enhancers	Ovary	ovary
24	chr15:93224800-93225600	Enhancers	NHLF	lung
25	chr15:93224800-93226200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:93224800-93227000	Enhancers	Fetal Muscle Trunk	muscle

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