Variant report

Variant	rs4778024
Chromosome Location	chr15:93213589-93213590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10520712	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12904403	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1808817	0.83[ASN][1000 genomes]
rs2077611	0.83[EUR][1000 genomes]
rs285726	0.82[ASN][1000 genomes]
rs285727	0.92[ASN][1000 genomes]
rs4778025	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1036897	chr15:93211991-93239388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4778024	LOC400451	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93211200-93214800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:93211200-93218000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:93211600-93214000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:93211600-93214600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:93211600-93221400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:93211800-93213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:93211800-93216400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:93211800-93216600	Weak transcription	Fetal Stomach	stomach
9	chr15:93211800-93218400	Weak transcription	Right Atrium	heart
10	chr15:93211800-93224400	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:93212000-93214600	Weak transcription	Fetal Kidney	kidney
12	chr15:93212800-93214800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:93213000-93215600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:93213200-93214400	Weak transcription	Fetal Lung	lung
15	chr15:93213200-93216600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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