Variant report

Variant	rs28574829
Chromosome Location	chr16:82297348-82297349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:82296873..82297746-chr16:83480098..83480904,3	K562	blood:
2	chr16:82296863..82298244-chr16:82377476..82378533,11	MCF-7	breast:
3	chr16:82297232..82297766-chr16:82673115..82673762,2	K562	blood:
4	chr16:82296968..82297743-chr16:82489893..82490632,4	MCF-7	breast:
5	chr16:82296959..82297780-chr16:82375911..82376777,3	MCF-7	breast:
6	chr16:82296862..82297823-chr16:82613624..82614666,8	MCF-7	breast:
7	chr16:82297332..82297930-chr16:82362205..82363171,2	MCF-7	breast:
8	chr16:82295686..82298241-chr16:82377026..82378513,53	MCF-7	breast:
9	chr16:82296965..82297742-chr16:82490169..82490880,2	MCF-7	breast:

No data

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13330173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13334464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1424154	1.00[EUR][1000 genomes]
rs16956538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956557	1.00[EUR][1000 genomes]
rs1862823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2098748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28458873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911384	1.00[EUR][1000 genomes]
rs2911402	1.00[EUR][1000 genomes]
rs2911408	1.00[EUR][1000 genomes]
rs2911426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911427	1.00[EUR][1000 genomes]
rs2967353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2967356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2967357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2967358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2967360	1.00[EUR][1000 genomes]
rs2967368	1.00[EUR][1000 genomes]
rs7191678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7206849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs979469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs979470	1.00[EUR][1000 genomes]
rs9927736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9933392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9941011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv532600	chr16:82197554-82314289	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
9	nsv522270	chr16:82252003-82325530	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv907017	chr16:82296012-82319653	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82295400-82298400	Enhancers	Fetal Heart	heart
2	chr16:82296400-82297600	Weak transcription	Left Ventricle	heart
3	chr16:82296400-82297600	Weak transcription	Right Atrium	heart
4	chr16:82297000-82297600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr16:82297000-82298200	Enhancers	Brain Cingulate Gyrus	brain
6	chr16:82297000-82298200	Enhancers	Brain Hippocampus Middle	brain
7	chr16:82297200-82297400	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr16:82297200-82297800	Enhancers	Brain Substantia Nigra	brain
9	chr16:82297200-82298000	Enhancers	HepG2	liver
10	chr16:82297200-82298200	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links