Variant report

Variant	rs9941011
Chromosome Location	chr16:82282378-82282379
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13330173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13334464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1424154	1.00[EUR][1000 genomes]
rs16956463	1.00[AMR][1000 genomes]
rs16956474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956557	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs1862823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2098748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2113284	1.00[AMR][1000 genomes]
rs28458873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28574829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911384	1.00[EUR][1000 genomes]
rs2911402	1.00[EUR][1000 genomes]
rs2911408	1.00[EUR][1000 genomes]
rs2911426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911427	1.00[EUR][1000 genomes]
rs2967353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2967356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2967357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2967358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2967360	1.00[EUR][1000 genomes]
rs2967368	1.00[EUR][1000 genomes]
rs34160244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6564980	1.00[AMR][1000 genomes]
rs7191678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7206849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8053276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062616	1.00[AMR][1000 genomes]
rs979469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs979470	1.00[EUR][1000 genomes]
rs9927736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9933392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9934783	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv532600	chr16:82197554-82314289	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv907015	chr16:82203758-82284056	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
10	nsv522270	chr16:82252003-82325530	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1067008	chr16:82273372-82287173	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82281600-82282400	Enhancers	Brain Anterior Caudate	brain
2	chr16:82281800-82283400	Enhancers	Gastric	stomach

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