Variant report

Variant	rs28578366
Chromosome Location	chr4:120536905-120536906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:120536229..120539044-chr4:120539476..120542801,3	K562	blood:

Extended variants
information (count: 165 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10006525	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap]
rs10006706	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap]
rs10008791	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10009566	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10009626	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10012252	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10013305	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10017335	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap]
rs10018280	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10019674	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10022185	0.82[EUR][1000 genomes]
rs10030660	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10031483	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10034450	0.85[ASW][hapmap];0.87[CEU][hapmap];0.82[JPT][hapmap];0.85[MKK][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10050092	0.94[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1010739	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1010740	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10518328	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap]
rs10518329	0.89[CEU][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap]
rs10518336	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs11098530	1.00[CEU][hapmap]
rs11098531	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098532	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11098534	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1155576	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11723090	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11729521	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap]
rs11731756	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11734241	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap]
rs11736416	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11737395	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11933966	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11935596	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11947234	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12498539	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12498599	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12499377	0.83[EUR][1000 genomes]
rs12502389	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12502423	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap]
rs12504773	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12505735	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507964	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12508504	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap]
rs12510138	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap]
rs12512646	0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs12642411	0.82[EUR][1000 genomes]
rs13122709	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13128602	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13134665	0.92[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13136462	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13140391	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13140409	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13149407	0.94[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1383532	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1383533	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1480931	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap]
rs1480936	0.92[ASW][hapmap];0.94[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1480939	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1480940	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1552092	0.92[ASW][hapmap];0.94[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1552095	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17006190	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17050695	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17051352	0.82[EUR][1000 genomes]
rs17051356	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2086450	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2127821	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2127823	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2170276	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2291185	0.92[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2306456	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2306457	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2389803	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs2389809	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2389880	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2389882	0.82[EUR][1000 genomes]
rs2389885	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2389886	0.82[EUR][1000 genomes]
rs2389887	0.82[EUR][1000 genomes]
rs28394116	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28535956	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718422	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28735358	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28787668	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28850368	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2892848	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap]
rs34278750	0.81[EUR][1000 genomes]
rs34308924	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34835603	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34868248	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35111518	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36040693	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3733519	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3733520	1.00[CEU][hapmap]
rs3733524	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs3733525	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3736115	0.85[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3756156	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775841	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3775843	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3775844	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3775845	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775847	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775848	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775849	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775852	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775854	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775858	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3806808	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3822190	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3822191	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3822192	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3822194	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3822195	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4504231	0.83[EUR][1000 genomes]
rs4596225	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4833624	0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs4998488	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55825515	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58452170	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59732491	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6534139	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6534140	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6534141	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6829903	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6832740	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6833334	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6834796	0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap]
rs6835635	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6847818	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6848389	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap]
rs6849171	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6849561	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap]
rs6853998	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6855918	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6858592	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6858777	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7659501	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7659551	0.81[GIH][hapmap]
rs7664440	0.81[EUR][1000 genomes]
rs7664986	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7665125	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs7669520	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7671096	0.81[EUR][1000 genomes]
rs7676296	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7678400	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7680063	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7680914	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7681544	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7687843	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7688802	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7692994	0.89[CEU][hapmap];0.94[JPT][hapmap]
rs7693919	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7695292	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7695620	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7699064	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9884402	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9995026	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9997631	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9998585	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1010753	chr4:120429028-120684310	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537233	chr4:120429028-120684310	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1006572	chr4:120432494-120694243	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs28578366	LOC644243	trans	multi-tissue	Pritchard
rs28578366	QRFPR	cis	parietal	SCAN
rs28578366	RP11-33B1.1	cis	Heart Left Ventricle	GTEx
rs28578366	RP11-33B1.1	cis	Esophagus Mucosa	GTEx
rs28578366	RP11-33B1.1	cis	lung	GTEx
rs28578366	C4orf3	cis	cerebellum	SCAN
rs28578366	RP11-33B1.4	cis	Whole Blood	GTEx
rs28578366	RP11-33B1.1	cis	Whole Blood	GTEx

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120492200-120540000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:120502600-120541000	Weak transcription	Left Ventricle	heart
3	chr4:120518800-120547200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:120520400-120537600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:120521000-120544800	Weak transcription	Fetal Intestine Large	intestine
6	chr4:120525800-120538800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:120526200-120546800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:120526400-120544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:120528400-120547400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:120528600-120547400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:120528600-120547600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:120528800-120539000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:120528800-120540200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:120528800-120543000	Weak transcription	Pancreas	Pancrea
15	chr4:120528800-120544200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr4:120528800-120545400	Weak transcription	Fetal Stomach	stomach
17	chr4:120529000-120546600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:120532400-120547600	Weak transcription	Lung	lung
19	chr4:120533000-120544200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:120533600-120539200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:120533600-120547400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:120534000-120547400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:120535600-120538200	Enhancers	Colon Smooth Muscle	Colon
24	chr4:120536000-120537000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:120536000-120537800	Enhancers	Aorta	Aorta
26	chr4:120536200-120537800	Enhancers	Rectal Smooth Muscle	rectum
27	chr4:120536400-120537200	Weak transcription	Fetal Lung	lung
28	chr4:120536600-120537000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr4:120536600-120537200	Genic enhancers	Osteobl	bone
30	chr4:120536600-120537600	Weak transcription	NHLF	lung
31	chr4:120536800-120537800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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