Variant report

Variant	rs28579551
Chromosome Location	chr15:93345652-93345653
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
2	chr15:93345270..93347540-chr15:93458175..93460933,2	MCF-7	breast:
3	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
4	chr15:93345609..93348948-chr15:93474005..93477394,3	K562	blood:
5	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:
6	chr15:93294832..93297833-chr15:93345075..93347173,3	MCF-7	breast:
7	chr15:93342322..93344100-chr15:93345625..93347591,2	MCF-7	breast:
8	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173575	Chromatin interaction
ENSG00000264173	Chromatin interaction
ENSG00000272888	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28574593	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28660596	0.87[EUR][1000 genomes]
rs28685637	0.87[EUR][1000 genomes]
rs28805897	0.87[EUR][1000 genomes]
rs28881565	0.81[EUR][1000 genomes]
rs58691149	0.92[ASN][1000 genomes]
rs58922739	0.92[ASN][1000 genomes]
rs59516837	0.92[ASN][1000 genomes]
rs60328420	0.92[ASN][1000 genomes]
rs60426330	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1042292	chr15:93286333-93374887	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv984199	chr15:93288362-93381522	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93325400-93351000	Weak transcription	Primary T cells from cord blood	blood
2	chr15:93325600-93347400	Weak transcription	Right Ventricle	heart
3	chr15:93331200-93346800	Weak transcription	Psoas Muscle	Psoas
4	chr15:93340800-93346600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:93341000-93346200	Weak transcription	Primary B cells from cord blood	blood
6	chr15:93341000-93346400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:93341000-93346400	Weak transcription	Fetal Thymus	thymus
8	chr15:93341000-93346800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:93341000-93347000	Weak transcription	Pancreas	Pancrea
10	chr15:93341000-93347200	Weak transcription	Spleen	Spleen
11	chr15:93341000-93347400	Weak transcription	Liver	Liver
12	chr15:93341000-93347400	Weak transcription	Brain Anterior Caudate	brain
13	chr15:93341000-93350800	Weak transcription	Thymus	Thymus
14	chr15:93341000-93351000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:93341000-93351200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:93341000-93351200	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:93341000-93351200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:93341000-93351400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:93341000-93351400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:93344200-93345800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:93344600-93345800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:93344600-93345800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr15:93344600-93345800	Enhancers	Duodenum Mucosa	Duodenum
24	chr15:93344600-93345800	Flanking Active TSS	Hela-S3	cervix
25	chr15:93344600-93346000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:93344600-93346200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:93344600-93347600	Enhancers	HepG2	liver
28	chr15:93344600-93347800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr15:93344600-93348000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:93344600-93348000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr15:93344600-93348800	Enhancers	Lung	lung
32	chr15:93344600-93348800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr15:93344600-93348800	Enhancers	NHDF-Ad	bronchial
34	chr15:93344600-93349000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:93344600-93351000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr15:93344600-93351200	Enhancers	Placenta	Placenta
37	chr15:93344800-93345800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr15:93344800-93345800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:93344800-93345800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:93344800-93345800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:93344800-93345800	Enhancers	Right Atrium	heart
42	chr15:93344800-93346000	Enhancers	Aorta	Aorta
43	chr15:93344800-93348200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:93344800-93348400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:93344800-93348400	Enhancers	HMEC	breast
46	chr15:93344800-93348400	Enhancers	NHLF	lung
47	chr15:93344800-93349000	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr15:93345000-93345800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr15:93345000-93345800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:93345000-93345800	Enhancers	Brain Substantia Nigra	brain

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