Variant report

Variant	rs58922739
Chromosome Location	chr15:93340913-93340914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93340001..93340988-chr15:93573611..93574112,2	MCF-7	breast:
2	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
3	chr15:93339283..93342293-chr15:93459393..93462402,3	MCF-7	breast:
4	chr15:93340168..93341091-chr15:93461034..93461984,5	MCF-7	breast:
5	chr15:93339719..93342145-chr15:93460930..93462920,3	MCF-7	breast:
6	chr15:93338892..93343222-chr15:93422830..93428061,5	MCF-7	breast:
7	chr15:93337242..93342192-chr15:93350779..93355697,6	MCF-7	breast:
8	chr15:93336742..93338839-chr15:93339129..93341121,2	K562	blood:
9	chr15:93340223..93340946-chr15:93351841..93352558,2	MCF-7	breast:
10	chr15:93339018..93342191-chr15:93351438..93355555,4	MCF-7	breast:
11	chr15:93338780..93342194-chr15:93442202..93446226,4	MCF-7	breast:
12	chr15:93339771..93341969-chr15:93361778..93364966,3	MCF-7	breast:
13	chr15:93339450..93342002-chr15:93423524..93425580,2	MCF-7	breast:
14	chr15:93338607..93340953-chr15:93442127..93443801,2	MCF-7	breast:
15	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
16	chr15:93340259..93341092-chr15:93461214..93462175,6	K562	blood:
17	chr15:93275172..93278021-chr15:93340296..93342950,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000264173	Chromatin interaction
ENSG00000272888	Chromatin interaction
ENSG00000173575	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000258741	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28574593	1.00[ASN][1000 genomes]
rs28579551	0.92[ASN][1000 genomes]
rs57861098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58013271	0.90[AFR][1000 genomes]
rs58691149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59516837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60328420	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60426330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7180371	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1042292	chr15:93286333-93374887	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv984199	chr15:93288362-93381522	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93304800-93344800	Weak transcription	Aorta	Aorta
2	chr15:93324200-93344600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:93325400-93351000	Weak transcription	Primary T cells from cord blood	blood
4	chr15:93325600-93347400	Weak transcription	Right Ventricle	heart
5	chr15:93331200-93346800	Weak transcription	Psoas Muscle	Psoas
6	chr15:93338800-93341000	Enhancers	Liver	Liver
7	chr15:93340000-93341000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:93340000-93341000	Enhancers	Brain Cingulate Gyrus	brain
9	chr15:93340000-93341000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr15:93340000-93341000	Enhancers	Stomach Mucosa	stomach
11	chr15:93340200-93341000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:93340200-93341000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr15:93340200-93341000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:93340200-93341000	Enhancers	Brain Angular Gyrus	brain
15	chr15:93340200-93341000	Enhancers	Brain Anterior Caudate	brain
16	chr15:93340200-93341000	Enhancers	Brain Germinal Matrix	brain
17	chr15:93340200-93341000	Enhancers	Brain Substantia Nigra	brain
18	chr15:93340200-93341000	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr15:93340200-93341000	Enhancers	Stomach Smooth Muscle	stomach
20	chr15:93340200-93341200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:93340200-93341200	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr15:93340400-93341000	Enhancers	Primary B cells from cord blood	blood
23	chr15:93340400-93341000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr15:93340400-93341000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr15:93340400-93341000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr15:93340400-93341000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr15:93340400-93341000	Enhancers	Brain Hippocampus Middle	brain
28	chr15:93340400-93341000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:93340400-93341000	Enhancers	Fetal Thymus	thymus
30	chr15:93340400-93341000	Enhancers	Pancreas	Pancrea
31	chr15:93340400-93341000	Enhancers	Dnd41	blood
32	chr15:93340400-93341000	Enhancers	Hela-S3	cervix
33	chr15:93340400-93341000	Enhancers	HSMM	muscle
34	chr15:93340400-93341000	Enhancers	K562	blood
35	chr15:93340400-93341000	Enhancers	NHDF-Ad	bronchial
36	chr15:93340400-93341200	Enhancers	HMEC	breast
37	chr15:93340600-93341000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr15:93340600-93341000	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr15:93340600-93341000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr15:93340600-93341000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:93340600-93341000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr15:93340600-93341000	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr15:93340600-93341000	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr15:93340600-93341000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:93340600-93341000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:93340600-93341000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:93340600-93341000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr15:93340600-93341000	Enhancers	Primary B cells from peripheral blood	blood
49	chr15:93340600-93341000	Enhancers	Primary T cells fromperipheralblood	blood
50	chr15:93340600-93341000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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