Variant report

Variant	rs285799
Chromosome Location	chr8:106118299-106118300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10092392	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10092717	0.97[ASN][1000 genomes]
rs10505073	0.87[ASN][1000 genomes]
rs285774	0.84[AMR][1000 genomes]
rs285777	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6468984	0.97[ASN][1000 genomes]
rs6983875	0.99[ASN][1000 genomes]
rs6984054	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7016987	0.98[ASN][1000 genomes]
rs7018217	0.96[ASN][1000 genomes]
rs9297355	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762763	chr8:105943295-106218634	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891253	chr8:105994885-106251476	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891254	chr8:106060970-106175867	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv465755	chr8:106107997-106121745	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106113600-106118800	Weak transcription	HUVEC	blood vessel
2	chr8:106118000-106119000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr8:106118000-106119800	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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