Variant report

Variant	rs28580150
Chromosome Location	chr7:12907110-12907111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:12732435..12735285-chr7:12904992..12907592,2	K562	blood:
2	chr7:12899240..12902196-chr7:12906624..12908887,2	K562	blood:
3	chr7:12906060..12908256-chr7:12910264..12912774,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10235332	0.83[ASN][1000 genomes]
rs10237365	0.83[ASN][1000 genomes]
rs10240064	1.00[AMR][1000 genomes]
rs10247964	1.00[AMR][1000 genomes]
rs10248233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10259615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262918	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10271364	0.91[AFR][1000 genomes]
rs10271534	0.82[AFR][1000 genomes]
rs10274349	1.00[ASN][1000 genomes]
rs10274842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10277517	1.00[ASN][1000 genomes]
rs10278841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280104	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12699421	0.83[ASN][1000 genomes]
rs12699422	0.83[ASN][1000 genomes]
rs13437931	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28576848	0.91[AFR][1000 genomes]
rs28593438	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28865373	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34269223	0.83[ASN][1000 genomes]
rs35988890	0.83[ASN][1000 genomes]
rs36003929	0.83[ASN][1000 genomes]
rs36091229	0.83[ASN][1000 genomes]
rs56753879	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57594449	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6942476	1.00[ASN][1000 genomes]
rs6954419	0.83[ASN][1000 genomes]
rs73296162	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296201	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73298122	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9648162	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12906200-12907200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links