Variant report

Variant	rs73296162
Chromosome Location	chr7:12890559-12890560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10240064	1.00[AMR][1000 genomes]
rs10247964	1.00[AMR][1000 genomes]
rs10248233	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262918	1.00[AMR][1000 genomes]
rs10271364	1.00[AFR][1000 genomes]
rs10271534	0.90[AFR][1000 genomes]
rs10274842	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280104	1.00[AMR][1000 genomes]
rs13437931	1.00[AMR][1000 genomes]
rs28576848	1.00[AFR][1000 genomes]
rs28580150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28593438	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28865373	1.00[AMR][1000 genomes]
rs56753879	1.00[AMR][1000 genomes]
rs57594449	1.00[AMR][1000 genomes]
rs73296201	1.00[AMR][1000 genomes]
rs73298122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12890200-12890800	Enhancers	Esophagus	oesophagus
2	chr7:12890200-12891600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:12890200-12891800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:12890200-12891800	Enhancers	NHEK	skin
5	chr7:12890400-12891800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:12890400-12891800	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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