Variant report

Variant	rs28580324
Chromosome Location	chr4:150087517-150087518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10021964	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471068	0.87[AFR][1000 genomes]
rs10520009	0.87[AFR][1000 genomes]
rs17025793	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17025796	0.83[AMR][1000 genomes]
rs17025861	0.87[AFR][1000 genomes]
rs28415117	0.87[AFR][1000 genomes]
rs893559	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880247	chr4:150057979-150159936	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1022438	chr4:150066349-150196711	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv595687	chr4:150070596-150178533	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150083400-150092200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:150084400-150087800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:150084400-150088400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:150086000-150087600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:150086000-150087800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:150086200-150087600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:150086400-150087600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:150086400-150087600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:150086400-150087600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:150086400-150087600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:150086400-150087600	Weak transcription	NH-A	brain
12	chr4:150086400-150087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:150086400-150088400	Weak transcription	HSMMtube	muscle
14	chr4:150086600-150087800	Weak transcription	NHLF	lung
15	chr4:150087000-150088600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:150087400-150087600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:150087400-150087800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr4:150087400-150088200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:150087400-150088400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:150087400-150088400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:150087400-150088400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:150087400-150088400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr4:150087400-150088400	Enhancers	Fetal Heart	heart
24	chr4:150087400-150088400	Enhancers	Osteobl	bone
25	chr4:150087400-150088600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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