Variant report

Variant	rs10021964
Chromosome Location	chr4:150097597-150097598
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10471068	0.94[AFR][1000 genomes]
rs10519997	0.80[AFR][1000 genomes]
rs10520009	0.94[AFR][1000 genomes]
rs17025793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17025796	0.83[AMR][1000 genomes]
rs17025861	0.94[AFR][1000 genomes]
rs28415117	0.94[AFR][1000 genomes]
rs28580324	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs893559	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880247	chr4:150057979-150159936	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1022438	chr4:150066349-150196711	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv595687	chr4:150070596-150178533	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv880248	chr4:150092178-150200706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150097200-150097600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr4:150097200-150097600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:150097200-150097600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:150097200-150097800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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