Variant report

Variant	rs28581459
Chromosome Location	chr8:107467296-107467297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10110667	1.00[AMR][1000 genomes]
rs10111145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439192	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28459991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28464065	1.00[AMR][1000 genomes]
rs28610156	1.00[AMR][1000 genomes]
rs28726251	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4289789	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6469072	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6983162	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6998946	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7003015	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7004750	0.92[AFR][1000 genomes]
rs7008797	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs736260	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838834	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842907	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107457000-107470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107463000-107467400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:107463000-107467400	Weak transcription	Osteobl	bone
4	chr8:107466000-107467400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107466000-107467600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:107466000-107487000	Weak transcription	Aorta	Aorta
7	chr8:107467000-107467400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:107467000-107468000	Enhancers	Stomach Mucosa	stomach
9	chr8:107467000-107468600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:107467000-107468600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:107467000-107469000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:107467000-107469600	Enhancers	HUVEC	blood vessel
13	chr8:107467200-107468600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:107467200-107469200	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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