Variant report

Variant	rs28726251
Chromosome Location	chr8:107458658-107458659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10110667	1.00[AMR][1000 genomes]
rs10111145	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28459991	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28464065	1.00[AMR][1000 genomes]
rs28581459	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28610156	1.00[AMR][1000 genomes]
rs4289789	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6469072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6983162	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6998946	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7003015	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7004750	0.91[AFR][1000 genomes]
rs7008797	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs736260	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838834	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7842907	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107452000-107465200	Weak transcription	Aorta	Aorta
2	chr8:107456400-107461200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:107456400-107462000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107457000-107470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:107457400-107461400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:107458000-107461400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:107458400-107462200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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