Variant report

Variant	rs28582587
Chromosome Location	chr15:75145882-75145883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75135427..75140750-chr15:75141950..75147054,10	K562	blood:
2	chr15:75144129..75146019-chr15:75191068..75193901,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178761	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000260824	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7168586	1.00[AMR][1000 genomes]
rs7171959	1.00[AMR][1000 genomes]
rs8039529	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75136200-75155800	Weak transcription	NH-A	brain
2	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
4	chr15:75136400-75147200	Strong transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:75136400-75149400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:75136400-75158000	Weak transcription	NHDF-Ad	bronchial
7	chr15:75136600-75146200	Strong transcription	A549	lung
8	chr15:75136600-75146600	Strong transcription	Brain Angular Gyrus	brain
9	chr15:75136600-75146800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:75136600-75146800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:75136600-75147200	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
13	chr15:75136800-75146600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:75136800-75147000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:75136800-75147000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:75136800-75147200	Strong transcription	Colonic Mucosa	Colon
17	chr15:75137000-75146400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:75137000-75146800	Strong transcription	Brain Germinal Matrix	brain
19	chr15:75137000-75147000	Strong transcription	Dnd41	blood
20	chr15:75137000-75147200	Strong transcription	Lung	lung
21	chr15:75137000-75147400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr15:75137000-75149800	Strong transcription	Fetal Stomach	stomach
23	chr15:75137000-75164800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:75137200-75146800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:75137200-75147200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:75137200-75147200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:75137200-75147200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:75137400-75146400	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr15:75137400-75146800	Strong transcription	Brain Hippocampus Middle	brain
30	chr15:75137400-75147400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:75137400-75150600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:75137600-75147200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:75137600-75147200	Strong transcription	Placenta	Placenta
34	chr15:75137800-75146600	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr15:75137800-75146600	Strong transcription	HSMMtube	muscle
36	chr15:75138000-75147000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr15:75138200-75147000	Strong transcription	Fetal Thymus	thymus
38	chr15:75138200-75147200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:75138200-75147200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:75138600-75147200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:75138800-75147200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:75139000-75146600	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr15:75139200-75146600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr15:75139200-75146600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:75139200-75147400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:75139400-75146800	Strong transcription	Aorta	Aorta
47	chr15:75139400-75147200	Strong transcription	Esophagus	oesophagus
48	chr15:75139600-75146000	Strong transcription	NHLF	lung
49	chr15:75139600-75146600	Strong transcription	Pancreas	Pancrea
50	chr15:75139600-75146800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood

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