Variant report

Variant	rs7171959
Chromosome Location	chr15:75121242-75121243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75110563..75112666-chr15:75119398..75122234,2	K562	blood:
2	chr15:75074148..75076667-chr15:75119485..75121788,2	K562	blood:
3	chr15:75109829..75110505-chr15:75121077..75121887,4	MCF-7	breast:
4	chr15:75118890..75121057-chr15:75121173..75124170,2	K562	blood:
5	chr15:75120331..75122019-chr15:75133523..75135622,3	K562	blood:
6	chr15:75062285..75064487-chr15:75119811..75122200,2	K562	blood:
7	chr15:75115096..75116793-chr15:75116936..75121281,3	K562	blood:
8	chr15:75106841..75109332-chr15:75121089..75123309,4	MCF-7	breast:
9	chr15:75121112..75122910-chr15:75127756..75129272,2	K562	blood:
10	chr15:75120959..75123170-chr15:75193396..75195091,2	MCF-7	breast:
11	chr15:75073853..75076173-chr15:75120593..75122828,2	MCF-7	breast:
12	chr15:75096057..75099661-chr15:75118891..75121480,3	K562	blood:
13	chr15:75112798..75114870-chr15:75119173..75121348,2	K562	blood:
14	chr15:75120576..75122611-chr15:75248587..75251052,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000140474	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000178718	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28582587	1.00[AMR][1000 genomes]
rs62621375	0.87[AFR][1000 genomes]
rs7168586	1.00[AMR][1000 genomes]
rs8039529	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv520527	chr15:75108636-75122856	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75111400-75128000	Weak transcription	Gastric	stomach
2	chr15:75119200-75123000	Weak transcription	Right Ventricle	heart
3	chr15:75119200-75123600	Weak transcription	Left Ventricle	heart
4	chr15:75119200-75125600	Weak transcription	Spleen	Spleen
5	chr15:75119400-75123600	Weak transcription	Right Atrium	heart
6	chr15:75119600-75124600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:75119600-75127800	Weak transcription	Pancreas	Pancrea
8	chr15:75121000-75121400	Enhancers	A549	lung
9	chr15:75121200-75121400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:75121200-75121400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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