Variant report

Variant	rs2858337
Chromosome Location	chr22:32939814-32939815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:31998728-32011472..22:32937912-32941862	K562	blood:
2	chr22:32938120..32940218-chr22:32990047..32992298,2	MCF-7	breast:
3	chr22:32935341..32940851-chr22:32952313..32956913,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198089	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs130456	1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[ASN][1000 genomes]
rs130457	0.94[CHB][hapmap];0.81[CHD][hapmap];0.85[ASN][1000 genomes]
rs135478	0.81[TSI][hapmap]
rs135479	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.87[TSI][hapmap]
rs4550760	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs5754137	0.81[TSI][hapmap]
rs5754138	0.81[TSI][hapmap]
rs5754144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs762908	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv914981	chr22:32912277-32940660	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2858337	XBP1	cis	parietal	SCAN
rs2858337	DUSP18	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32929000-32940800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:32934200-32942200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:32935200-32942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:32936200-32941400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:32936600-32941000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr22:32936800-32941400	Weak transcription	HepG2	liver
7	chr22:32936800-32942000	Weak transcription	Liver	Liver
8	chr22:32937200-32940000	Enhancers	Right Atrium	heart
9	chr22:32937200-32942000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr22:32937400-32941400	Weak transcription	Hela-S3	cervix
11	chr22:32938000-32940400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr22:32938800-32941000	Weak transcription	HSMM	muscle
13	chr22:32938800-32942200	Weak transcription	K562	blood
14	chr22:32939200-32940600	Weak transcription	Fetal Stomach	stomach
15	chr22:32939200-32940800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr22:32939200-32940800	Weak transcription	HSMMtube	muscle
17	chr22:32939200-32940800	Weak transcription	NHDF-Ad	bronchial
18	chr22:32939200-32940800	Weak transcription	NHLF	lung
19	chr22:32939200-32941000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr22:32939200-32942400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr22:32939200-32942400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr22:32939200-32943000	Weak transcription	Spleen	Spleen
23	chr22:32939400-32942000	Weak transcription	Fetal Lung	lung
24	chr22:32939400-32942400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr22:32939600-32941000	Weak transcription	Ovary	ovary
26	chr22:32939600-32941000	Weak transcription	Right Ventricle	heart
27	chr22:32939800-32941200	Weak transcription	Adipose Nuclei	Adipose
28	chr22:32939800-32942200	Weak transcription	Placenta	Placenta
29	chr22:32939800-32942400	Weak transcription	Left Ventricle	heart
30	chr22:32939800-32949000	Weak transcription	Lung	lung

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