Variant report

Variant	rs5754144
Chromosome Location	chr22:32946113-32946114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs130456	1.00[CHB][hapmap];0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs130457	0.94[CHB][hapmap];0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs135479	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.85[TSI][hapmap]
rs2858337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4550760	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs762908	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs5754144	DUSP18	cis	parietal	SCAN
rs5754144	XBP1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32939800-32949000	Weak transcription	Lung	lung
2	chr22:32943200-32951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:32943200-32959400	Weak transcription	Left Ventricle	heart
4	chr22:32943800-32951000	Weak transcription	Ovary	ovary
5	chr22:32943800-32951200	Weak transcription	Adipose Nuclei	Adipose
6	chr22:32943800-32951200	Weak transcription	Right Atrium	heart
7	chr22:32943800-32953200	Weak transcription	Spleen	Spleen
8	chr22:32945800-32947200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links