Variant report

Variant	rs28587261
Chromosome Location	chr8:10025655-10025656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10094809	1.00[AMR][1000 genomes]
rs17151235	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151402	1.00[AMR][1000 genomes]
rs28393341	1.00[AMR][1000 genomes]
rs28399250	1.00[AMR][1000 genomes]
rs28412858	1.00[AMR][1000 genomes]
rs58363482	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60595937	1.00[AMR][1000 genomes]
rs60664517	1.00[AMR][1000 genomes]
rs6988687	1.00[AMR][1000 genomes]
rs73532718	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534561	1.00[AMR][1000 genomes]
rs7816198	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819126	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:10003400-10026600	Weak transcription	Liver	Liver
3	chr8:10016200-10026000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:10019000-10025800	Weak transcription	Fetal Intestine Small	intestine
5	chr8:10020000-10025800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:10021400-10029600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:10024000-10026000	Enhancers	Brain Germinal Matrix	brain
8	chr8:10025000-10029200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr8:10025000-10030000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:10025200-10031200	Weak transcription	Brain Angular Gyrus	brain
11	chr8:10025400-10030200	Weak transcription	Brain Substantia Nigra	brain
12	chr8:10025400-10030800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:10025600-10026600	Weak transcription	Fetal Brain Male	brain
14	chr8:10025600-10027600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:10025600-10029600	Weak transcription	Fetal Brain Female	brain
16	chr8:10025600-10030800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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