Variant report

Variant	rs7816198
Chromosome Location	chr8:10048129-10048130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10094809	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151235	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17151402	1.00[AMR][1000 genomes]
rs17151697	1.00[CHB][hapmap]
rs28393341	1.00[AMR][1000 genomes]
rs28399250	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28412858	1.00[AMR][1000 genomes]
rs28587261	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4840477	1.00[AMR][1000 genomes]
rs58363482	1.00[AMR][1000 genomes]
rs59767984	1.00[AMR][1000 genomes]
rs60595937	1.00[AMR][1000 genomes]
rs60664517	1.00[AMR][1000 genomes]
rs6988687	1.00[AMR][1000 genomes]
rs73532718	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534561	1.00[AMR][1000 genomes]
rs7819126	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10042800-10049400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:10044200-10050000	Weak transcription	Fetal Brain Female	brain
3	chr8:10046600-10049000	Weak transcription	Fetal Brain Male	brain
4	chr8:10047200-10048600	Weak transcription	Primary B cells from cord blood	blood
5	chr8:10048000-10049000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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