Variant report

Variant	rs59767984
Chromosome Location	chr8:10167176-10167177
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:112640154..112641899-chr8:10166576..10168096,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153107	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10086995	1.00[EUR][1000 genomes]
rs10098637	1.00[EUR][1000 genomes]
rs10101698	1.00[EUR][1000 genomes]
rs10113178	1.00[AMR][1000 genomes]
rs11784828	1.00[EUR][1000 genomes]
rs13258224	1.00[EUR][1000 genomes]
rs13280593	1.00[EUR][1000 genomes]
rs17151402	1.00[AMR][1000 genomes]
rs17151819	1.00[EUR][1000 genomes]
rs17151838	1.00[EUR][1000 genomes]
rs17151840	1.00[EUR][1000 genomes]
rs17151867	1.00[EUR][1000 genomes]
rs17151871	1.00[EUR][1000 genomes]
rs17151875	1.00[EUR][1000 genomes]
rs17151882	1.00[EUR][1000 genomes]
rs28393341	1.00[AMR][1000 genomes]
rs28399250	1.00[AMR][1000 genomes]
rs28412858	1.00[AMR][1000 genomes]
rs4840477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4841316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60595937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6601434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6601437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6988687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6997398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6997776	1.00[AMR][1000 genomes]
rs7009948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7012830	1.00[AMR][1000 genomes]
rs73534551	1.00[EUR][1000 genomes]
rs73534552	1.00[EUR][1000 genomes]
rs73534561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7816198	1.00[AMR][1000 genomes]
rs7819126	1.00[AMR][1000 genomes]
rs7830402	1.00[EUR][1000 genomes]
rs7831992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv610264	chr8:10158428-10181176	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10151400-10177000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:10151400-10178800	Weak transcription	Spleen	Spleen
3	chr8:10157200-10177600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:10158000-10177400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:10158600-10178200	Weak transcription	Brain Anterior Caudate	brain
6	chr8:10158800-10177600	Weak transcription	Primary B cells from cord blood	blood
7	chr8:10159000-10177400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:10159200-10170600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:10160200-10170400	Weak transcription	Fetal Brain Female	brain
10	chr8:10160600-10167800	Weak transcription	Liver	Liver
11	chr8:10161800-10177600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr8:10163800-10177200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:10163800-10177200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:10163800-10177800	Weak transcription	Primary T cells from cord blood	blood
15	chr8:10164400-10167200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:10165600-10169000	Enhancers	Brain Germinal Matrix	brain
17	chr8:10165800-10169000	Enhancers	Fetal Brain Male	brain
18	chr8:10166000-10167800	Enhancers	Brain Angular Gyrus	brain
19	chr8:10166200-10167200	Enhancers	Brain Cingulate Gyrus	brain
20	chr8:10166200-10167600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:10166600-10167200	Flanking Active TSS	Brain Substantia Nigra	brain
22	chr8:10166800-10167200	Active TSS	Brain Hippocampus Middle	brain
23	chr8:10167000-10167200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr8:10167000-10167200	Enhancers	Right Ventricle	heart
25	chr8:10167000-10167400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
26	chr8:10167000-10168200	Enhancers	Fetal Muscle Leg	muscle

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