Variant report

Variant	rs17151840
Chromosome Location	chr8:10235075-10235076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10086995	1.00[EUR][1000 genomes]
rs10098637	1.00[EUR][1000 genomes]
rs10101698	1.00[EUR][1000 genomes]
rs11774221	1.00[YRI][hapmap]
rs11784828	1.00[EUR][1000 genomes]
rs13258224	1.00[EUR][1000 genomes]
rs13280593	1.00[EUR][1000 genomes]
rs17149339	1.00[YRI][hapmap]
rs17151819	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17151838	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17151867	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17151871	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17151875	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17151882	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs4840477	1.00[EUR][1000 genomes]
rs4841316	1.00[EUR][1000 genomes]
rs59767984	1.00[EUR][1000 genomes]
rs60595937	1.00[EUR][1000 genomes]
rs6601434	1.00[EUR][1000 genomes]
rs6601437	1.00[EUR][1000 genomes]
rs6988687	1.00[EUR][1000 genomes]
rs6997398	1.00[EUR][1000 genomes]
rs7009948	1.00[EUR][1000 genomes]
rs73534551	1.00[EUR][1000 genomes]
rs73534552	1.00[EUR][1000 genomes]
rs73534561	1.00[EUR][1000 genomes]
rs7830402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10282400	Weak transcription	Gastric	stomach
2	chr8:10221000-10235200	Weak transcription	Right Ventricle	heart
3	chr8:10223800-10235400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:10224000-10255800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:10224400-10235200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:10228600-10247800	Weak transcription	Liver	Liver
7	chr8:10229000-10239400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:10229400-10235200	Weak transcription	Psoas Muscle	Psoas
9	chr8:10231600-10235200	Weak transcription	Spleen	Spleen
10	chr8:10232200-10235400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:10232800-10235600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:10233000-10235400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:10233000-10235600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:10233400-10235600	Enhancers	Fetal Brain Female	brain
15	chr8:10233400-10236200	Enhancers	Fetal Muscle Leg	muscle
16	chr8:10233600-10235800	Enhancers	Right Atrium	heart
17	chr8:10233600-10236200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr8:10233800-10236800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:10233800-10240000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:10233800-10241400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr8:10233800-10252400	Weak transcription	Fetal Brain Male	brain
22	chr8:10234000-10236200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:10234000-10241200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:10234200-10235200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:10234200-10235400	Weak transcription	HSMMtube	muscle
26	chr8:10234400-10235200	Enhancers	Brain Hippocampus Middle	brain
27	chr8:10234600-10236000	Enhancers	Left Ventricle	heart
28	chr8:10235000-10235600	Enhancers	Duodenum Mucosa	Duodenum
29	chr8:10235000-10236000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr8:10235000-10236200	Enhancers	Pancreas	Pancrea

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