Variant report

Variant	rs28587903
Chromosome Location	chr8:118067042-118067043
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10505311	0.86[ASN][1000 genomes]
rs16889413	0.93[ASN][1000 genomes]
rs16889416	0.93[ASN][1000 genomes]
rs16889435	0.93[ASN][1000 genomes]
rs16889438	0.86[ASN][1000 genomes]
rs17745491	0.86[ASN][1000 genomes]
rs17745556	0.86[ASN][1000 genomes]
rs17745669	0.86[ASN][1000 genomes]
rs57177943	0.86[ASN][1000 genomes]
rs60590289	0.86[ASN][1000 genomes]
rs73315694	0.93[ASN][1000 genomes]
rs73315697	0.93[ASN][1000 genomes]
rs73315698	0.93[ASN][1000 genomes]
rs73317633	0.86[ASN][1000 genomes]
rs73701682	1.00[ASN][1000 genomes]
rs931821	0.90[ASN][1000 genomes]
rs9987375	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118058200-118073800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:118062400-118067600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:118062600-118067400	Weak transcription	Fetal Lung	lung
4	chr8:118066600-118069200	Enhancers	Fetal Muscle Leg	muscle
5	chr8:118066600-118069200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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