Variant report

Variant	rs10505311
Chromosome Location	chr8:118174318-118174319
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10505314	0.88[GIH][hapmap]
rs11776475	0.88[GIH][hapmap]
rs16889413	0.93[ASN][1000 genomes]
rs16889416	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16889417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16889419	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16889429	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16889430	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16889432	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16889433	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16889435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16889438	1.00[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16889449	1.00[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16889450	1.00[EUR][1000 genomes]
rs17745491	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17745556	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17745669	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28587903	0.86[ASN][1000 genomes]
rs57177943	1.00[ASN][1000 genomes]
rs60590289	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73315694	0.93[ASN][1000 genomes]
rs73315697	0.93[ASN][1000 genomes]
rs73315698	0.93[ASN][1000 genomes]
rs73317633	1.00[ASN][1000 genomes]
rs73317664	1.00[EUR][1000 genomes]
rs73701682	0.86[ASN][1000 genomes]
rs931821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118171200-118174400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr8:118174200-118175200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links