Variant report

Variant	rs16889433
Chromosome Location	chr8:118135539-118135540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118130740..118132861-chr8:118134521..118136080,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10505311	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10505313	0.82[YRI][hapmap]
rs10505314	0.94[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs13254783	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs13269408	0.89[LWK][hapmap];0.87[YRI][hapmap]
rs16889398	1.00[TSI][hapmap]
rs16889410	1.00[EUR][1000 genomes]
rs16889413	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889416	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889417	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs16889419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16889429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs16889430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs16889432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs16889435	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889438	0.86[ASW][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17745491	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17745556	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[ASN][1000 genomes]
rs17745669	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17812997	0.87[YRI][hapmap]
rs28587903	0.93[ASN][1000 genomes]
rs4876702	0.89[AFR][1000 genomes]
rs57177943	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57845219	1.00[EUR][1000 genomes]
rs58516434	0.87[AFR][1000 genomes]
rs60590289	0.93[ASN][1000 genomes]
rs6982630	0.89[LWK][hapmap];0.87[YRI][hapmap]
rs7006646	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs73315694	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315697	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73315698	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317633	0.93[ASN][1000 genomes]
rs73701682	0.93[ASN][1000 genomes]
rs7843392	1.00[TSI][hapmap]
rs885205	1.00[TSI][hapmap]
rs924921	0.95[YRI][hapmap]
rs931821	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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