Variant report

Variant	rs13269408
Chromosome Location	chr8:118121251-118121252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10107643	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216387	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs10505293	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap]
rs10505310	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10505312	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10505313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10505314	0.89[LWK][hapmap];0.87[MKK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes]
rs10955804	0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs11989353	0.81[JPT][hapmap]
rs12676721	0.94[CEU][hapmap];0.87[JPT][hapmap]
rs12679333	0.94[CEU][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes]
rs12679500	0.81[JPT][hapmap]
rs13254783	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs13270550	0.94[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs13277279	0.94[CEU][hapmap];0.87[JPT][hapmap]
rs13279687	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13281296	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1505527	0.81[JPT][hapmap]
rs16889402	0.80[JPT][hapmap];0.83[TSI][hapmap]
rs16889413	0.81[AFR][1000 genomes]
rs16889416	0.89[LWK][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs16889417	0.82[YRI][hapmap]
rs16889419	0.87[YRI][hapmap]
rs16889429	0.81[YRI][hapmap]
rs16889430	0.82[YRI][hapmap]
rs16889432	0.82[YRI][hapmap]
rs16889433	0.89[LWK][hapmap];0.87[YRI][hapmap]
rs16889435	0.87[YRI][hapmap]
rs17745149	0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs17812997	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17813200	0.91[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1876080	0.91[CHB][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.95[ASN][1000 genomes]
rs1910895	0.81[JPT][hapmap]
rs35228127	0.99[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35934480	0.88[ASN][1000 genomes]
rs4876370	0.88[EUR][1000 genomes]
rs4876371	0.88[EUR][1000 genomes]
rs4876702	0.86[AFR][1000 genomes]
rs4876703	0.91[CHB][hapmap];0.88[JPT][hapmap];0.80[TSI][hapmap];0.90[ASN][1000 genomes]
rs58516434	0.84[AFR][1000 genomes]
rs62510556	0.93[EUR][1000 genomes]
rs6469673	0.81[JPT][hapmap]
rs6469675	0.91[CHB][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap];0.89[ASN][1000 genomes]
rs6469676	0.85[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs6469677	0.91[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs67425784	0.88[EUR][1000 genomes]
rs6982630	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982713	0.81[JPT][hapmap]
rs6983495	0.85[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs6984249	0.85[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs6990569	0.88[EUR][1000 genomes]
rs6998536	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000505	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs7006646	0.82[YRI][hapmap]
rs7007057	0.85[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7014190	0.91[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7015338	0.93[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs7015397	0.85[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7017296	0.81[JPT][hapmap];0.81[TSI][hapmap]
rs73315694	0.81[AFR][1000 genomes]
rs73315698	0.81[AFR][1000 genomes]
rs7815190	0.81[JPT][hapmap]
rs7821939	0.81[JPT][hapmap]
rs7826750	0.93[ASN][1000 genomes]
rs7833734	0.80[JPT][hapmap]
rs868651	0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs924921	0.82[YRI][hapmap]
rs924922	0.85[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118115800-118127000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:118121200-118121400	Enhancers	Pancreas	Pancrea
3	chr8:118121200-118122200	Enhancers	Pancreatic Islets	Pancreatic Islet

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