Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10107643	0.91[EUR][1000 genomes]
rs10505310	0.88[EUR][1000 genomes]
rs10505312	0.93[EUR][1000 genomes]
rs10505313	0.89[EUR][1000 genomes]
rs11989800	0.80[ASN][1000 genomes]
rs12679333	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13269408	0.88[EUR][1000 genomes]
rs13270550	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13279687	0.91[EUR][1000 genomes]
rs13281296	0.92[EUR][1000 genomes]
rs16889365	0.81[ASN][1000 genomes]
rs16889402	0.85[ASN][1000 genomes]
rs35228127	0.91[EUR][1000 genomes]
rs35875446	0.80[ASN][1000 genomes]
rs4876370	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4876371	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4876696	0.80[ASN][1000 genomes]
rs57686953	0.83[ASN][1000 genomes]
rs62510556	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6469673	0.82[ASN][1000 genomes]
rs6982630	0.91[EUR][1000 genomes]
rs6982713	0.81[ASN][1000 genomes]
rs6990569	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6998536	0.91[EUR][1000 genomes]
rs7015338	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7017296	0.81[ASN][1000 genomes]
rs7833193	0.81[ASN][1000 genomes]
rs7833734	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118163600-118167000	Enhancers	Fetal Intestine Large	intestine
2	chr8:118164200-118166800	Enhancers	Fetal Intestine Small	intestine
3	chr8:118165200-118168400	Genic enhancers	Pancreatic Islets	Pancreatic Islet
4	chr8:118165400-118167800	Weak transcription	Aorta	Aorta
5	chr8:118166000-118166200	Enhancers	Fetal Brain Male	brain

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