Variant report

Variant	rs6982713
Chromosome Location	chr8:118061175-118061176
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10107643	0.94[JPT][hapmap]
rs10216387	0.88[JPT][hapmap]
rs10505293	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs10505313	0.82[JPT][hapmap]
rs10955804	0.90[CEU][hapmap]
rs11989353	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11989800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12676721	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12679333	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12679500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13257552	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13269408	0.81[JPT][hapmap]
rs13270550	0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs13277279	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1505527	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16889363	0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16889365	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889402	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17745149	1.00[CEU][hapmap];0.89[JPT][hapmap];0.99[EUR][1000 genomes]
rs17812997	0.82[JPT][hapmap]
rs17813200	0.90[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs1876080	0.90[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs1910895	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35875446	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35934480	0.82[EUR][1000 genomes]
rs4876696	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876703	0.85[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs57686953	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62510556	0.81[ASN][1000 genomes]
rs6469673	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469675	0.90[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs6469676	0.86[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs6469677	0.86[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs67425784	0.81[ASN][1000 genomes]
rs6982630	0.81[JPT][hapmap]
rs6983495	0.86[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs6984249	1.00[CEU][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes]
rs6998536	0.93[JPT][hapmap]
rs7000505	1.00[CEU][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes]
rs7007057	0.90[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs7014190	0.90[CEU][hapmap];0.88[JPT][hapmap]
rs7015338	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs7015397	0.84[JPT][hapmap]
rs7017296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815190	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7821939	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7826750	0.92[EUR][1000 genomes]
rs7833193	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868651	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes]
rs924922	0.90[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032976	chr8:118032075-118065907	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118058200-118073800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:118058600-118061600	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:118060400-118061800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr8:118060400-118062600	Enhancers	Fetal Lung	lung

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