Variant report

Variant	rs13270550
Chromosome Location	chr8:118162108-118162109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10107643	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs10505310	1.00[CEU][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs10505312	1.00[CEU][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes]
rs10505313	0.94[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs11989353	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs11989800	0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12676721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12678848	1.00[YRI][hapmap]
rs12679333	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12679500	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs13269408	0.94[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs13277279	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs13279687	0.90[EUR][1000 genomes]
rs13281296	0.94[CEU][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes]
rs1505527	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs16889365	0.81[ASN][1000 genomes]
rs16889402	0.89[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17812997	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs17813200	0.84[JPT][hapmap]
rs1910895	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs35228127	0.88[EUR][1000 genomes]
rs35875446	0.80[ASN][1000 genomes]
rs4876370	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4876371	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4876696	0.80[ASN][1000 genomes]
rs4876703	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs57686953	0.83[ASN][1000 genomes]
rs62510556	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6469673	0.85[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs6469675	0.82[JPT][hapmap]
rs6469676	0.84[JPT][hapmap]
rs6469677	0.84[JPT][hapmap]
rs67425784	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6981381	1.00[YRI][hapmap]
rs6982630	0.94[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6982713	0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6983495	0.84[JPT][hapmap]
rs6990569	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6997269	1.00[YRI][hapmap]
rs6998536	1.00[CEU][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs7007057	0.84[JPT][hapmap]
rs7015338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7015397	0.84[JPT][hapmap]
rs7017296	0.89[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs7815190	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs7821939	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7833193	0.81[ASN][1000 genomes]
rs7833734	0.89[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs924922	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118161600-118163400	Enhancers	Fetal Brain Male	brain
2	chr8:118161800-118162800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:118161800-118163200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:118162000-118162400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr8:118162000-118162800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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