Variant report
Variant | rs6990569 |
---|---|
Chromosome Location | chr8:118168520-118168521 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10107643 | 0.93[EUR][1000 genomes] |
rs10505310 | 0.86[EUR][1000 genomes] |
rs10505312 | 0.92[EUR][1000 genomes] |
rs10505313 | 0.89[EUR][1000 genomes] |
rs12679333 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs13269408 | 0.88[EUR][1000 genomes] |
rs13270550 | 0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs13279687 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13281296 | 0.91[EUR][1000 genomes] |
rs16889402 | 0.84[ASN][1000 genomes] |
rs35228127 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs4876370 | 0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4876371 | 0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs57686953 | 0.82[ASN][1000 genomes] |
rs62510556 | 0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6469673 | 0.80[ASN][1000 genomes] |
rs67425784 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6982630 | 0.93[EUR][1000 genomes] |
rs6998536 | 0.92[EUR][1000 genomes] |
rs7015338 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
2 | nsv1031711 | chr8:118134669-118322562 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1027039 | chr8:118143762-118460954 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:118168400-118171000 | Enhancers | Pancreatic Islets | Pancreatic Islet |