Variant report
| Variant | rs4876370 |
|---|---|
| Chromosome Location | chr8:118174941-118174942 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10107643 | 0.83[EUR][1000 genomes] |
| rs10505310 | 0.98[EUR][1000 genomes] |
| rs10505312 | 0.92[EUR][1000 genomes] |
| rs10505313 | 0.88[EUR][1000 genomes] |
| rs11778200 | 0.83[CHB][hapmap] |
| rs11778222 | 0.83[CHB][hapmap] |
| rs12679333 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13258054 | 0.83[CHB][hapmap] |
| rs13269119 | 0.83[CHB][hapmap] |
| rs13269408 | 0.88[EUR][1000 genomes] |
| rs13270550 | 0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13279687 | 0.83[EUR][1000 genomes] |
| rs13281296 | 0.92[EUR][1000 genomes] |
| rs13282002 | 0.83[CHB][hapmap] |
| rs16889402 | 0.82[ASN][1000 genomes] |
| rs17812918 | 0.81[CHB][hapmap] |
| rs35228127 | 0.84[EUR][1000 genomes] |
| rs4876369 | 0.83[CHB][hapmap] |
| rs4876371 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4876701 | 0.82[CHB][hapmap] |
| rs4876702 | 0.91[CHB][hapmap] |
| rs57686953 | 0.80[ASN][1000 genomes] |
| rs62510556 | 0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs67425784 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6982630 | 0.83[EUR][1000 genomes] |
| rs6990569 | 0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6998536 | 0.83[EUR][1000 genomes] |
| rs7015338 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7016437 | 0.83[CHB][hapmap] |
| rs7831269 | 0.83[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031711 | chr8:118134669-118322562 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1027039 | chr8:118143762-118460954 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:118174200-118175200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr8:118174600-118176800 | Strong transcription | Pancreatic Islets | Pancreatic Islet |
