Variant report

Variant	rs4876369
Chromosome Location	chr8:118163504-118163505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10505314	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs11776475	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11776904	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777797	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11778200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11780215	1.00[JPT][hapmap]
rs11989843	0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs13254783	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs13258054	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13260245	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13262027	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268674	0.81[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs13269119	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274429	0.92[ASN][1000 genomes]
rs13281298	0.86[JPT][hapmap]
rs13282002	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1394872	0.86[JPT][hapmap]
rs1394874	0.82[JPT][hapmap]
rs1394875	0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs16889363	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs17665254	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17745203	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17745233	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17812822	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17812918	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2202486	0.86[JPT][hapmap]
rs34012554	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34049087	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34212210	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34488641	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34506303	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34551329	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35105724	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35355401	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35650185	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4433184	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4514015	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4876370	0.83[CHB][hapmap]
rs4876371	0.85[JPT][hapmap]
rs4876695	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4876698	0.81[ASN][1000 genomes]
rs4876701	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4876702	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs58516434	0.85[EUR][1000 genomes]
rs59475323	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67029063	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67460493	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67925810	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980503	0.81[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs6999899	0.82[JPT][hapmap]
rs7011057	0.82[JPT][hapmap]
rs7016437	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71530857	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71530860	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815720	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7816805	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7817754	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7827401	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7831269	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7832168	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs905904	0.82[JPT][hapmap]
rs924921	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs977138	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118162400-118165200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr8:118162600-118164600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:118162800-118165800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:118163200-118163800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:118163400-118164000	Enhancers	Fetal Kidney	kidney
6	chr8:118163400-118165800	Weak transcription	Fetal Brain Male	brain

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