Variant report

Variant	rs11989843
Chromosome Location	chr8:118150993-118150994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118137952..118140134-chr8:118149845..118153085,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10955804	0.80[CEU][hapmap]
rs11776904	0.92[ASN][1000 genomes]
rs11777797	0.85[ASN][1000 genomes]
rs11778200	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs11778222	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11780215	0.82[JPT][hapmap]
rs13258054	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs13260245	0.80[ASN][1000 genomes]
rs13262027	0.92[ASN][1000 genomes]
rs13268674	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13269119	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs13274429	0.85[ASN][1000 genomes]
rs13282002	0.86[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1394875	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1505521	0.84[YRI][hapmap]
rs16889363	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16889399	0.84[YRI][hapmap]
rs17665254	0.86[JPT][hapmap]
rs17745203	0.81[ASN][1000 genomes]
rs17745233	0.86[JPT][hapmap]
rs17812822	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs17812918	0.85[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs17813200	0.80[CEU][hapmap]
rs34012554	0.80[ASN][1000 genomes]
rs34049087	0.80[ASN][1000 genomes]
rs34212210	0.83[ASN][1000 genomes]
rs34488641	0.85[ASN][1000 genomes]
rs34506303	0.92[ASN][1000 genomes]
rs34551329	0.83[ASN][1000 genomes]
rs35105724	0.81[ASN][1000 genomes]
rs35355401	0.83[ASN][1000 genomes]
rs35650185	0.81[ASN][1000 genomes]
rs4433184	0.85[ASN][1000 genomes]
rs4514015	0.85[ASN][1000 genomes]
rs4876369	0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs4876695	0.80[ASN][1000 genomes]
rs4876698	0.88[CEU][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4876701	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4876702	0.86[JPT][hapmap]
rs59475323	0.85[ASN][1000 genomes]
rs6469674	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs6469678	0.84[YRI][hapmap]
rs67029063	0.85[ASN][1000 genomes]
rs67460493	0.83[ASN][1000 genomes]
rs67925810	0.92[ASN][1000 genomes]
rs6980503	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6996470	0.89[YRI][hapmap]
rs7004777	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs7007057	0.80[CEU][hapmap]
rs7016437	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs71530857	0.80[ASN][1000 genomes]
rs71530860	0.92[ASN][1000 genomes]
rs73317621	0.91[AFR][1000 genomes]
rs73317630	0.90[AFR][1000 genomes]
rs73317635	0.80[AFR][1000 genomes]
rs73317638	0.80[AFR][1000 genomes]
rs7815720	0.82[JPT][hapmap]
rs7816805	0.85[ASN][1000 genomes]
rs7817754	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827401	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs7827851	0.88[YRI][hapmap];0.90[AFR][1000 genomes]
rs7831269	0.86[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs7832168	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7832958	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs924922	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118146800-118152600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr8:118150800-118151200	ZNF genes & repeats	Aorta	Aorta

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