Variant report

Variant	rs35650185
Chromosome Location	chr8:118076306-118076307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11776904	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11777797	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11778200	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11780215	0.81[ASN][1000 genomes]
rs11989843	0.81[ASN][1000 genomes]
rs13254783	0.87[EUR][1000 genomes]
rs13258054	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13260245	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13262027	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13268674	0.91[ASN][1000 genomes]
rs13269119	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13274429	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13282002	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1394875	0.85[ASN][1000 genomes]
rs16889363	0.92[ASN][1000 genomes]
rs17665254	0.88[ASN][1000 genomes]
rs17745203	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745233	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812822	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17812918	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34012554	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34049087	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34212210	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34488641	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34506303	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34551329	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35105724	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35355401	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4433184	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4514015	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4876369	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4876695	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876698	0.92[ASN][1000 genomes]
rs4876701	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876702	0.84[EUR][1000 genomes]
rs59475323	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67029063	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67460493	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67925810	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6980503	0.91[ASN][1000 genomes]
rs7016437	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71530854	0.83[ASN][1000 genomes]
rs71530857	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71530860	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7816805	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7817754	0.81[ASN][1000 genomes]
rs7827401	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7831269	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7832168	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118070800-118076800	Enhancers	Fetal Lung	lung
2	chr8:118071800-118077000	Enhancers	Fetal Muscle Leg	muscle
3	chr8:118075200-118076800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr8:118075800-118077800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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