Variant report

Variant	rs17812822
Chromosome Location	chr8:118072887-118072888
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118068187..118070512-chr8:118072749..118074741,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10505314	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11776475	0.84[EUR][1000 genomes]
rs11776904	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11777797	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11778200	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11778222	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11780215	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11989843	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs13253992	1.00[CEU][hapmap]
rs13254783	0.93[CEU][hapmap]
rs13258054	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13260245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13262027	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13268674	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs13269119	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13274429	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13281298	0.86[JPT][hapmap]
rs13282002	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1394872	0.86[JPT][hapmap]
rs1394874	0.82[JPT][hapmap]
rs1394875	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs16889363	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs17665254	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17745203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17812918	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2202486	0.86[JPT][hapmap]
rs34012554	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34049087	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34212210	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34488641	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34506303	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34551329	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35105724	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35355401	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35650185	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433184	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4514015	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4876369	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4876371	0.85[JPT][hapmap]
rs4876695	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876698	0.92[ASN][1000 genomes]
rs4876701	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876702	0.86[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs58516434	0.86[EUR][1000 genomes]
rs59475323	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67029063	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67460493	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67925810	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6980503	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs6999899	0.82[JPT][hapmap]
rs7011057	0.82[JPT][hapmap]
rs7016437	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71530854	0.83[ASN][1000 genomes]
rs71530857	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71530860	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7815720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7816805	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7817754	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7827401	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7831269	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7832168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs905904	0.82[JPT][hapmap]
rs924921	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs977138	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118058200-118073800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:118068400-118073200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:118069400-118074000	Weak transcription	HSMMtube	muscle
4	chr8:118070800-118076000	Enhancers	Fetal Stomach	stomach
5	chr8:118070800-118076800	Enhancers	Fetal Lung	lung
6	chr8:118071800-118077000	Enhancers	Fetal Muscle Leg	muscle

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