Variant report

Variant	rs7817754
Chromosome Location	chr8:118154981-118154982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11776904	0.92[ASN][1000 genomes]
rs11777797	0.85[ASN][1000 genomes]
rs11778200	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs11778222	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11780215	0.82[JPT][hapmap]
rs11989843	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258054	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs13260245	0.80[ASN][1000 genomes]
rs13262027	0.92[ASN][1000 genomes]
rs13268674	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13269119	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs13274429	0.85[ASN][1000 genomes]
rs13282002	0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1394875	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1505521	0.87[GIH][hapmap]
rs16889363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16889367	0.86[GIH][hapmap]
rs16889399	0.87[GIH][hapmap]
rs16889402	0.82[MEX][hapmap]
rs17665254	0.82[JPT][hapmap]
rs17745203	0.81[ASN][1000 genomes]
rs17745233	0.82[JPT][hapmap]
rs17812822	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs17812918	0.84[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1876080	0.83[MEX][hapmap]
rs34012554	0.80[ASN][1000 genomes]
rs34049087	0.80[ASN][1000 genomes]
rs34212210	0.83[ASN][1000 genomes]
rs34488641	0.85[ASN][1000 genomes]
rs34506303	0.92[ASN][1000 genomes]
rs34551329	0.83[ASN][1000 genomes]
rs35105724	0.81[ASN][1000 genomes]
rs35355401	0.83[ASN][1000 genomes]
rs35650185	0.81[ASN][1000 genomes]
rs4433184	0.85[ASN][1000 genomes]
rs4514015	0.85[ASN][1000 genomes]
rs4876369	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs4876695	0.80[ASN][1000 genomes]
rs4876698	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4876701	0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs4876702	0.82[JPT][hapmap]
rs4876703	0.83[MEX][hapmap]
rs59475323	0.85[ASN][1000 genomes]
rs6469674	0.94[GIH][hapmap]
rs6469675	0.83[MEX][hapmap]
rs6469678	0.94[GIH][hapmap]
rs67029063	0.85[ASN][1000 genomes]
rs67460493	0.83[ASN][1000 genomes]
rs67925810	0.92[ASN][1000 genomes]
rs6980503	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7000505	0.82[MEX][hapmap]
rs7016437	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs7017296	0.82[MEX][hapmap]
rs71530857	0.80[ASN][1000 genomes]
rs71530860	0.92[ASN][1000 genomes]
rs7815720	0.82[JPT][hapmap]
rs7816805	0.85[ASN][1000 genomes]
rs7827401	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs7831269	0.86[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs7832168	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs7832958	0.94[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118154800-118155400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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