Variant report

Variant	rs6980503
Chromosome Location	chr8:118078751-118078752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10505293	0.83[MEX][hapmap]
rs11776904	0.80[ASN][1000 genomes]
rs11777797	0.87[ASN][1000 genomes]
rs11778200	0.81[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs11778222	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs11780215	0.82[JPT][hapmap]
rs11989353	0.83[YRI][hapmap]
rs11989800	0.83[YRI][hapmap];0.86[AFR][1000 genomes]
rs11989843	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12679500	0.80[YRI][hapmap]
rs13258054	0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs13260245	0.92[ASN][1000 genomes]
rs13262027	0.80[ASN][1000 genomes]
rs13268674	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269119	0.81[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs13274429	0.87[ASN][1000 genomes]
rs13282002	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1394874	0.82[GIH][hapmap]
rs1394875	1.00[ASW][hapmap];0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1505527	0.82[YRI][hapmap]
rs16889363	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16889365	0.86[AFR][1000 genomes]
rs16889402	0.91[MEX][hapmap]
rs17665254	0.83[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs17745203	0.91[ASN][1000 genomes]
rs17745233	0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs17812822	0.87[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs17812918	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1910895	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs34012554	0.92[ASN][1000 genomes]
rs34049087	0.92[ASN][1000 genomes]
rs34212210	0.90[ASN][1000 genomes]
rs34488641	0.87[ASN][1000 genomes]
rs34506303	0.80[ASN][1000 genomes]
rs34551329	0.90[ASN][1000 genomes]
rs35105724	0.91[ASN][1000 genomes]
rs35355401	0.90[ASN][1000 genomes]
rs35650185	0.91[ASN][1000 genomes]
rs35875446	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4433184	0.87[ASN][1000 genomes]
rs4514015	0.87[ASN][1000 genomes]
rs4876369	0.81[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs4876695	0.92[ASN][1000 genomes]
rs4876698	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876701	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs4876702	0.82[JPT][hapmap]
rs57686953	0.86[AFR][1000 genomes]
rs59475323	0.87[ASN][1000 genomes]
rs6469673	0.88[AFR][1000 genomes]
rs67029063	0.87[ASN][1000 genomes]
rs67460493	0.90[ASN][1000 genomes]
rs67925810	0.80[ASN][1000 genomes]
rs6999899	0.82[GIH][hapmap]
rs7000505	0.91[MEX][hapmap]
rs7011057	0.82[GIH][hapmap]
rs7014190	0.84[MEX][hapmap]
rs7016437	0.81[CHB][hapmap];0.86[CHD][hapmap];0.91[ASN][1000 genomes]
rs7017296	0.82[ASW][hapmap];0.89[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs71530857	0.92[ASN][1000 genomes]
rs71530860	0.80[ASN][1000 genomes]
rs7815190	0.82[ASW][hapmap];0.96[LWK][hapmap];0.84[MEX][hapmap];0.86[MKK][hapmap]
rs7815720	0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap]
rs7816805	0.87[ASN][1000 genomes]
rs7817754	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7827401	0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7831269	0.81[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7832168	0.87[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7833734	0.85[LWK][hapmap];0.87[MKK][hapmap];0.86[AFR][1000 genomes]
rs868651	0.84[MEX][hapmap]
rs905904	0.82[GIH][hapmap]
rs977138	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118077800-118078800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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