Variant report

Variant	rs16889363
Chromosome Location	chr8:118061952-118061953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10505293	0.83[MEX][hapmap]
rs11776904	0.81[ASN][1000 genomes]
rs11777797	0.86[ASN][1000 genomes]
rs11778200	0.86[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs11778222	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11780215	0.82[JPT][hapmap]
rs11989843	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13257552	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13258054	0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs13260245	0.91[ASN][1000 genomes]
rs13262027	0.81[ASN][1000 genomes]
rs13268674	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13269119	0.86[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs13274429	0.86[ASN][1000 genomes]
rs13282002	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1394874	0.82[GIH][hapmap]
rs1394875	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16889402	0.91[MEX][hapmap]
rs17665254	0.88[CEU][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs17745203	0.92[ASN][1000 genomes]
rs17745233	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs17812822	0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs17812918	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs34012554	0.91[ASN][1000 genomes]
rs34049087	0.91[ASN][1000 genomes]
rs34212210	0.89[ASN][1000 genomes]
rs34488641	0.86[ASN][1000 genomes]
rs34506303	0.81[ASN][1000 genomes]
rs34551329	0.89[ASN][1000 genomes]
rs35105724	0.92[ASN][1000 genomes]
rs35355401	0.89[ASN][1000 genomes]
rs35650185	0.92[ASN][1000 genomes]
rs4433184	0.86[ASN][1000 genomes]
rs4514015	0.86[ASN][1000 genomes]
rs4876369	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4876695	0.91[ASN][1000 genomes]
rs4876696	0.88[AFR][1000 genomes]
rs4876698	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876701	0.86[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs4876702	0.82[JPT][hapmap]
rs59475323	0.86[ASN][1000 genomes]
rs67029063	0.86[ASN][1000 genomes]
rs67460493	0.89[ASN][1000 genomes]
rs67925810	0.81[ASN][1000 genomes]
rs6980503	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982713	0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6999899	0.82[GIH][hapmap]
rs7000505	0.91[MEX][hapmap]
rs7011057	0.82[GIH][hapmap]
rs7014190	0.84[MEX][hapmap]
rs7016437	0.86[CHB][hapmap];0.86[CHD][hapmap];0.92[ASN][1000 genomes]
rs7017296	0.91[MEX][hapmap]
rs71530857	0.91[ASN][1000 genomes]
rs71530860	0.81[ASN][1000 genomes]
rs7815190	0.84[MEX][hapmap]
rs7815720	0.91[CHD][hapmap];0.82[JPT][hapmap]
rs7816805	0.86[ASN][1000 genomes]
rs7817754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7827401	0.91[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7831269	0.86[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7832168	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs868651	0.84[MEX][hapmap]
rs905904	0.82[GIH][hapmap]
rs977138	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032976	chr8:118032075-118065907	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118058200-118073800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:118060400-118062600	Enhancers	Fetal Lung	lung
3	chr8:118061600-118062000	Enhancers	Fetal Muscle Leg	muscle
4	chr8:118061800-118062400	Active TSS	Pancreatic Islets	Pancreatic Islet

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