Variant report

Variant	rs868651
Chromosome Location	chr8:118074726-118074727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118068187..118070512-chr8:118072749..118074741,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10107643	0.80[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs10216387	0.86[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap]
rs10505293	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.84[MEX][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs10505310	0.82[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs10505312	0.82[CHB][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10505313	0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10955804	0.90[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs11989353	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs11989800	1.00[CEU][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12676721	0.82[JPT][hapmap]
rs12679333	0.82[JPT][hapmap]
rs12679500	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs13257552	0.92[EUR][1000 genomes]
rs13269408	0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs13277279	0.82[JPT][hapmap]
rs13279687	0.88[ASN][1000 genomes]
rs13281296	0.82[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs1394875	0.92[MEX][hapmap]
rs1505527	0.88[JPT][hapmap]
rs16889363	0.84[MEX][hapmap]
rs16889365	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16889402	0.95[CEU][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs17745149	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17812997	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs17813200	0.90[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs1876080	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1910895	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35228127	0.91[ASN][1000 genomes]
rs35875446	0.94[EUR][1000 genomes]
rs35934480	0.87[ASN][1000 genomes]
rs4876696	0.99[EUR][1000 genomes]
rs4876703	0.94[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs57686953	0.94[EUR][1000 genomes]
rs6469673	1.00[CEU][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6469675	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6469676	0.85[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs6469677	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6980503	0.84[MEX][hapmap]
rs6982630	0.86[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.84[TSI][hapmap];0.90[ASN][1000 genomes]
rs6982713	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes]
rs6983495	0.85[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs6984249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998536	0.82[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7000505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007057	0.90[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs7014190	0.93[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7015397	0.91[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7017296	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs7815190	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs7821939	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7826750	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7833193	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7833734	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs924922	0.90[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118070800-118076000	Enhancers	Fetal Stomach	stomach
2	chr8:118070800-118076800	Enhancers	Fetal Lung	lung
3	chr8:118071800-118077000	Enhancers	Fetal Muscle Leg	muscle
4	chr8:118074000-118075000	Enhancers	HSMMtube	muscle
5	chr8:118074000-118075800	Enhancers	Stomach Smooth Muscle	stomach
6	chr8:118074200-118075200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:118074400-118075600	Enhancers	Fetal Muscle Trunk	muscle
8	chr8:118074400-118075800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:118074600-118075600	Enhancers	Brain Germinal Matrix	brain

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