Variant report

Variant	rs6469677
Chromosome Location	chr8:118168856-118168857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10107643	0.80[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs10216387	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs10505293	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs10505310	0.80[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10505312	0.80[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10505313	0.91[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs10955804	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11989353	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs11989800	0.86[CEU][hapmap]
rs12679500	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs13257552	0.82[EUR][1000 genomes]
rs13269408	0.91[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs13270550	0.84[JPT][hapmap]
rs13279687	0.90[ASN][1000 genomes]
rs13281296	0.86[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1505527	0.84[JPT][hapmap]
rs16889402	0.90[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs17745149	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17812997	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs17813200	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1876080	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1910895	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs35228127	0.87[ASN][1000 genomes]
rs35875446	0.83[EUR][1000 genomes]
rs35934480	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57686953	0.82[EUR][1000 genomes]
rs6469673	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs6469675	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469676	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6982630	0.91[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs6982713	0.86[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs6983495	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984249	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6998536	0.88[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs7000505	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7007057	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7014190	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7015338	0.84[JPT][hapmap]
rs7015397	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7017296	0.85[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs7815190	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs7821939	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs7826750	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7833734	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs868651	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs924922	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118168400-118171000	Enhancers	Pancreatic Islets	Pancreatic Islet

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