Variant report

Variant	rs13257552
Chromosome Location	chr8:118063835-118063836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11989800	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12679333	0.85[ASN][1000 genomes]
rs16889363	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16889365	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16889402	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17745149	0.99[EUR][1000 genomes]
rs17813200	0.83[EUR][1000 genomes]
rs1876080	0.82[EUR][1000 genomes]
rs1910895	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35875446	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35934480	0.82[EUR][1000 genomes]
rs4876696	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4876703	0.84[EUR][1000 genomes]
rs57686953	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6469673	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6469675	0.84[EUR][1000 genomes]
rs6469676	0.83[EUR][1000 genomes]
rs6469677	0.82[EUR][1000 genomes]
rs6982713	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6983495	0.82[EUR][1000 genomes]
rs6984249	0.97[EUR][1000 genomes]
rs7000505	0.98[EUR][1000 genomes]
rs7007057	0.83[EUR][1000 genomes]
rs7017296	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7826750	0.92[EUR][1000 genomes]
rs7833193	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7833734	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs868651	0.92[EUR][1000 genomes]
rs924922	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032976	chr8:118032075-118065907	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118058200-118073800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:118062400-118067600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:118062600-118067400	Weak transcription	Fetal Lung	lung

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