Variant report

Variant	rs7833734
Chromosome Location	chr8:118070815-118070816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10107643	0.93[JPT][hapmap]
rs10216387	0.84[GIH][hapmap];0.87[JPT][hapmap]
rs10505293	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.92[TSI][hapmap]
rs10505313	0.80[JPT][hapmap]
rs10955804	0.90[CEU][hapmap]
rs11989353	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11989800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12676721	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs12679333	0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs12679500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13257552	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13268674	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13269408	0.80[JPT][hapmap]
rs13270550	0.89[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs13277279	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs1394875	0.83[LWK][hapmap];0.84[MKK][hapmap];0.80[AFR][1000 genomes]
rs1505527	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16889365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889402	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17745149	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs17812997	0.80[JPT][hapmap]
rs17813200	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs1876080	0.90[CEU][hapmap];0.87[GIH][hapmap];0.87[JPT][hapmap];0.89[TSI][hapmap]
rs1910895	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35875446	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876696	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876698	0.86[AFR][1000 genomes]
rs4876703	0.85[CEU][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap]
rs57686953	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62510556	0.81[ASN][1000 genomes]
rs6469673	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469675	0.90[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap]
rs6469676	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs6469677	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs67425784	0.81[ASN][1000 genomes]
rs6980503	0.85[LWK][hapmap];0.87[MKK][hapmap];0.86[AFR][1000 genomes]
rs6982630	0.80[JPT][hapmap];0.84[TSI][hapmap]
rs6982713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983495	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs6984249	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes]
rs6998536	0.93[JPT][hapmap]
rs7000505	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes]
rs7007057	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs7014190	0.90[CEU][hapmap];0.87[GIH][hapmap];0.87[JPT][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs7015338	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs7015397	0.82[JPT][hapmap]
rs7017296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815190	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs7821939	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7826750	0.87[EUR][1000 genomes]
rs7833193	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868651	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs924922	0.90[CEU][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118058200-118073800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:118068400-118073200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:118069200-118071800	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:118069400-118074000	Weak transcription	HSMMtube	muscle
5	chr8:118070800-118076000	Enhancers	Fetal Stomach	stomach
6	chr8:118070800-118076800	Enhancers	Fetal Lung	lung

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