Variant report

Variant	rs12676721
Chromosome Location	chr8:118137545-118137546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10107643	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs10216387	0.82[JPT][hapmap]
rs10505293	0.82[JPT][hapmap]
rs10505310	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs10505312	1.00[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs10505313	0.94[CEU][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11989353	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs11989800	0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs12678848	1.00[YRI][hapmap]
rs12679333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679500	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs13257552	0.85[ASN][1000 genomes]
rs13269408	0.94[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13270550	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13277279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13279687	0.89[EUR][1000 genomes]
rs13281296	0.94[CEU][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes]
rs1505527	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs16889365	0.88[ASN][1000 genomes]
rs16889402	0.89[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs17745149	0.83[JPT][hapmap]
rs17812997	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs1876080	0.82[JPT][hapmap]
rs1910895	0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs35228127	0.89[EUR][1000 genomes]
rs35875446	0.87[ASN][1000 genomes]
rs4876370	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4876371	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4876696	0.87[ASN][1000 genomes]
rs4876703	0.80[CEU][hapmap]
rs57686953	0.90[ASN][1000 genomes]
rs62510556	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6469673	0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs67425784	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6981381	1.00[YRI][hapmap]
rs6982630	0.94[CEU][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs6982713	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6984249	0.83[JPT][hapmap]
rs6990569	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6997269	1.00[YRI][hapmap]
rs6998536	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7000505	0.82[JPT][hapmap]
rs7014190	0.82[JPT][hapmap]
rs7015338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7017296	0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7815190	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs7821939	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs7833193	0.88[ASN][1000 genomes]
rs7833734	0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs868651	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1031711	chr8:118134669-118322562	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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