Variant report

Variant	rs17665254
Chromosome Location	chr8:118058596-118058597
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11776904	0.82[ASN][1000 genomes]
rs11777797	0.84[ASN][1000 genomes]
rs11778200	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11778222	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11780215	1.00[JPT][hapmap]
rs11781067	0.81[CEU][hapmap]
rs11989843	0.86[JPT][hapmap]
rs13258054	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13260245	0.87[ASN][1000 genomes]
rs13262027	0.82[ASN][1000 genomes]
rs13268674	0.88[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs13269119	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13274429	0.84[ASN][1000 genomes]
rs13281298	0.86[JPT][hapmap]
rs13282002	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1394872	0.86[JPT][hapmap]
rs1394874	0.82[JPT][hapmap]
rs1394875	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs16889363	0.88[CEU][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs17745203	0.88[ASN][1000 genomes]
rs17745233	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17812822	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17812918	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2202486	0.86[JPT][hapmap]
rs34012554	0.87[ASN][1000 genomes]
rs34049087	0.87[ASN][1000 genomes]
rs34212210	0.87[ASN][1000 genomes]
rs34488641	0.84[ASN][1000 genomes]
rs34506303	0.82[ASN][1000 genomes]
rs34551329	0.87[ASN][1000 genomes]
rs35105724	0.88[ASN][1000 genomes]
rs35355401	0.87[ASN][1000 genomes]
rs35650185	0.88[ASN][1000 genomes]
rs4433184	0.84[ASN][1000 genomes]
rs4514015	0.84[ASN][1000 genomes]
rs4876369	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4876371	0.85[JPT][hapmap]
rs4876695	0.87[ASN][1000 genomes]
rs4876698	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs4876701	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4876702	1.00[JPT][hapmap]
rs59475323	0.84[ASN][1000 genomes]
rs67029063	0.84[ASN][1000 genomes]
rs67460493	0.87[ASN][1000 genomes]
rs67925810	0.82[ASN][1000 genomes]
rs6980503	0.83[CEU][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs6999899	0.82[JPT][hapmap]
rs7011057	0.82[JPT][hapmap]
rs7016437	0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs71530857	0.87[ASN][1000 genomes]
rs71530860	0.82[ASN][1000 genomes]
rs7815720	1.00[JPT][hapmap]
rs7816805	0.84[ASN][1000 genomes]
rs7817754	0.82[JPT][hapmap]
rs7827401	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7831269	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7832168	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs905904	0.82[JPT][hapmap]
rs977138	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032976	chr8:118032075-118065907	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118056600-118058600	Enhancers	Fetal Muscle Leg	muscle
2	chr8:118056600-118059400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:118056600-118059400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:118057200-118058600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:118058000-118060000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr8:118058200-118073800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:118058400-118058600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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