Variant report

Variant	rs11780215
Chromosome Location	chr8:118057538-118057539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118056632..118057588-chr8:118316103..118316951,2	MCF-7	breast:
2	chr8:118057127..118057700-chr8:118316063..118316814,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11777797	0.80[ASN][1000 genomes]
rs11778200	1.00[JPT][hapmap]
rs11778222	1.00[JPT][hapmap]
rs11781136	1.00[ASW][hapmap]
rs11989843	0.82[JPT][hapmap]
rs13258054	1.00[JPT][hapmap]
rs13260245	0.83[ASN][1000 genomes]
rs13266865	1.00[ASW][hapmap]
rs13268674	0.82[JPT][hapmap]
rs13269119	1.00[JPT][hapmap]
rs13274429	0.80[ASN][1000 genomes]
rs13281298	0.82[JPT][hapmap]
rs13282002	1.00[JPT][hapmap]
rs1394872	0.82[JPT][hapmap]
rs1394874	0.82[JPT][hapmap]
rs1394875	0.82[JPT][hapmap]
rs16889363	0.82[JPT][hapmap]
rs17665254	1.00[JPT][hapmap]
rs17745016	1.00[ASW][hapmap]
rs17745203	0.81[ASN][1000 genomes]
rs17745233	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17812822	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17812918	1.00[JPT][hapmap]
rs2202486	0.82[JPT][hapmap]
rs34012554	0.83[ASN][1000 genomes]
rs34049087	0.83[ASN][1000 genomes]
rs34212210	0.83[ASN][1000 genomes]
rs34488641	0.80[ASN][1000 genomes]
rs34551329	0.83[ASN][1000 genomes]
rs35105724	0.81[ASN][1000 genomes]
rs35355401	0.83[ASN][1000 genomes]
rs35650185	0.81[ASN][1000 genomes]
rs4433184	0.80[ASN][1000 genomes]
rs4514015	0.80[ASN][1000 genomes]
rs4876369	1.00[JPT][hapmap]
rs4876371	0.82[JPT][hapmap]
rs4876695	0.83[ASN][1000 genomes]
rs4876701	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4876702	1.00[JPT][hapmap]
rs59475323	0.80[ASN][1000 genomes]
rs67029063	0.80[ASN][1000 genomes]
rs67460493	0.83[ASN][1000 genomes]
rs6980503	0.82[JPT][hapmap]
rs6999899	0.82[JPT][hapmap]
rs7011057	0.82[JPT][hapmap]
rs7016437	0.80[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs71530854	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71530857	0.83[ASN][1000 genomes]
rs7815720	0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs7816805	0.80[ASN][1000 genomes]
rs7817754	0.82[JPT][hapmap]
rs7827401	0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7831269	0.82[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7832168	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs905904	0.82[JPT][hapmap]
rs977138	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032976	chr8:118032075-118065907	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118056600-118057600	Enhancers	Brain Germinal Matrix	brain
2	chr8:118056600-118058600	Enhancers	Fetal Muscle Leg	muscle
3	chr8:118056600-118059400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:118056600-118059400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:118056800-118057600	Enhancers	Fetal Brain Male	brain
6	chr8:118057000-118057800	Enhancers	Fetal Stomach	stomach
7	chr8:118057200-118057600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:118057200-118057600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
9	chr8:118057200-118057600	Bivalent Enhancer	Dnd41	blood
10	chr8:118057200-118058600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:118057400-118057600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:118057400-118057600	Enhancers	Brain Anterior Caudate	brain
13	chr8:118057400-118057600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:118057400-118058000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr8:118057400-118058000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:118057400-118058400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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